text.skipToContent text.skipToNavigation
Need help? Please contact us

Cortex structure

The cerebral cortex is the brain’s outer layer of neural tissue in humans and other mammals. The cerebral cortex plays a vital role in memory, attention, perception, awareness and consciousness (Figure 1). It’s folded and has a much greater surface area in the confined volume of the skull. The fold or ridge is termed as gyrus and the groove or fissure is termed as sulcus. In humans, more than 2/3 of the cerebral cortex is buried in the sulci.

The neocortex

Most of the cerebral cortex is neocortex. However, phylogenetically there are older areas of cortex termed the allocortex. These more primitive areas are located in the medial temporal lobes and are involved with olfaction (smell) and survival functions such as visceral and emotional reactions. In turn, the allocortex has two components: the paleocortex and archicortex. The paleocortex includes the piriform lobe, specialized for olfaction, and the entorhinal cortex. The archicortex consists of the hippocampus, which is a three-layered cortex dealing with encoding declarative memory and spatial functions. The neocortex represents the great majority of the cerebral cortex. It has six layers and contains between 10 and 14 billion neurons.

Six cell layers of the cerebral cortex

Cortical layer Characteristics
I – Molecular Consists of only a few cells
II – Extra granular Relatively thin layer consisting of numerous small, densely packed neurons
III – Pyramidal Composed of medium-sized pyramidal nerve cells
IV – Inner granule Contains small, irregularly shaped nerve cells
V - Ganglionic Includes large pyramidal cells
VI - Multiform Small polymorphic and fusiform nerve cells

Table adapted from https://sisu.ut.ee/histology/cerebral-cortex

Functionally, the layers of the cerebral cortex can be divided into three parts. The supragranular layers consist of layers I to III. The supragranular layers are the primary origin and termination of intracortical connections, which are either associational (i.e., with other areas of the same hemisphere), or commissural (i.e., connections to the opposite hemisphere, primarily through the corpus callosum). The supragranular portion of the cortex is highly developed in humans and permits communication between one portion of the cortex and other regions. The internal granular layer, layer IV, receives thalamocortical connections, especially from the specific thalamic nuclei. This is most prominent in the primary sensory cortices. The infragranular layers, layers V and VI, primarily connect the cerebral cortex with subcortical regions. These layers are most developed in motor cortical areas. The motor areas have extremely small or non-existent granular layers and are often called 'agranular cortex'. Layer V gives rise to all of the principal cortical efferent projections to basal ganglia, brain stem and spinal cord. Layer VI, the multiform or fusiform layer, projects primarily to the thalamus.

Neuropathology of the cortex

Cortical diseases fall into two major categories, degenerative and developmental. In degenerative conditions such as Alzheimer’s disease, progressive cell loss leads to functional deficits and cognitive decline. In developmental disorders however, failures in cellular migration, cortical maturation or synaptic pruning, can lead to dysplasias or learning disorders. Cortical neurons have been found to play a major role in these degenerative and developmental disorders. Other neuropathological conditions are caused due to neuronal loss, brain atrophy and gliosis.

In vitro applications of cortical neurons in research

In vitro cortical cell culture systems (primary cell cultures) are considered to be the most valuable tool for studying Neuronal Plasticity and Neurophotonics. In addition, their role in Down’s syndrome, immunocytochemistry, in-silico models, drug screening studies, gene transfer technology, and advanced cell culture models have been extensively studied. Lonza cells and media have been used by different research groups for a better understanding of these applications.

  • Neuronal plasticity: Neuronal plasticity refers to the adaptation of neural function and structure. Cortical neurons have been used in understanding the mechanism of neuronal plasticity. When neurons are lost due to stroke, for example, a group of new cortical neurons will begin to perform the functions of the original group. Clinical examples of this phenomenon include taking control over speech and swallowing. 
  • Neurophotonics: Cortical neurons have been used to study the connectivity and function of neuronal circuits. Photonics and optical tools offer possibilities to assess how signals are integrated in cells, how cells are interconnected to form circuits, and how neuronal activity relates to behavior. Two basic approaches are often taken to decipher how motor cortex relates to movements: 1. stimulate or silence motor cortex and measure the resulting effect on skeletal muscle activity and body movements and 2. record motor cortex activity during motor behavior and assess how this correlates with movement parameters. With neurophotonics and optogenetic methods, these two basic types of approaches are being pursued at even high levels of specificity and spatiotemporal precision.
  • Drug screening: Microelectrode array (MEA) technology enables drug screening and “disease-in-a-dish” modeling by measuring the electrical activity of cultured networks of neural or cardiac cells. Human stem cell technologies, advancements in genetic models, and regulatory initiatives for drug screening have increased the demand for MEA-based assays. A multiwell MEA platform enhanced by optogenic stimulation would enable selective excitation and inhibition of targeted cell types. The system enables finely graded selective control of light delivery during simultaneous recording of network activity in each well. This technique can be used for applications including cardiac safety screening, neural toxicity assessment, and advanced characterization of complex neuronal diseases like Alzheimer’s disease. Lonza cells isolated from neural cortex of rat have been used by certain groups and have been cited in the publications.
  • Gene transfer technology (transfection): Efficient gene transfer is an important tool for the study of neuronal function and biology. This has proved difficult and inefficient with traditional transfection strategies, which can also be fairly toxic. Even viral mediated gene transfer, although highly efficient, can be time consuming. Nucleofector technology, based on optimized electroporation in a cell type–specific solution, enables direct delivery of DNA and/or RNA into the cell nucleus. This strategy results in reproducible, rapid, and efficient transfection of a broad range of cells, including primary neurons. Lonza has developed nucleofection kit for mouse and rat neuronal cells which have been used and reported by various groups.

References

Agamanolis DP. Neuropathology- An interactive course for medical students and residents. 2011

Busciglio, Jorge; Yankner, Bruce A. Apoptosis and increased generation of reactive oxygen species in Down's syndrome neurons in vitro. Nature; London 1995. 776-779

Clements IP, Millarda DC, Nicolinia AM, Preyera AJ, Griera R, Heckerlinga A, Bluma RA, Tylera P, McSweeneyb KM, Lub YF, Hallb D, Rossa JD. Optogenetic stimulation of multiwell MEA plates for neural and cardiac applications. Clinical and Translational Neurophotonics; Neural Imaging and Sensing; and Optogenetics and Optical Manipulation 2016

Gärtner A, Collin L, Lalli G. Nucleofection of Primary Neurons. Methods in Enzymology. 2006. 406: 374-388

Gresa-Arribas N, Viéitez C, Dentesano G, Serratosa J, Saura J, Solà C. Modelling Neuroinflammation In Vitro: a Tool to Test the Potential Neuroprotective Effect of Anti-Inflammatory Agents. PLoS 2012. Volume 7, Issue 9

Jones EG. Viewpoint: the core and matrix of thalamic organization. Neuroscience 1998. 85 (2): 331–45

Kandel ER, Schwartz JH, Jessell, Thomas M. Principles of Neural Science. Fourth Edition. 2000. 324

Pan XD, Chen XC, Zhu YG, Zhang J, Huang TW. Neuroprotective role of tripchlorolide on inflammatory neurotoxicity induced by lipopolysaccharide-activated microglia.  Biochem Pharmacology (2008),76: 362-372

Qian L, Xu Z, Zhang W, Wilson B, Hong JS, Flood PM. A natural dextrorotatory morphinan analog, is anti-inflammatory and neuroprotective through inhibition of microglial NADPH oxidase.  Journal of Neuroinflamm 2007. 4: 23-36

Sarnat HB, Nochlin D, Born DE. Neuronal nuclear antigen (NeuN): a marker of neuronal maturation in early human fetal nervous system. Brain and Development 1998. 20(2): 88-94

Setty Y, Chen CC, Secrier M, Skoblov N, Kalamatianos D, Emmott S. How neurons migrate: a dynamic in-silico model for neuronal migration in developing cortex. BMC Systems Biology 2011. 5: 154

Shipp S. Structure and function of the cerebral cortex. Current Biology. 2007. 17(12)

Suter BA, Yamawaki N, Borges K, Li X, Kiritani T, Hooks BM,  Shepherd GMG. Neurophotonics applications to motor cortex research. Neurophotonics 2014

Warren  N et.al. Oxford Journals National Institutes of Health. 1999. 627–635